562 lines
20 KiB
Python
562 lines
20 KiB
Python
import os
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import sqlite3
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import chromadb
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import pytest
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from mempalace.backends import (
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GetResult,
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PalaceRef,
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QueryResult,
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UnsupportedFilterError,
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available_backends,
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get_backend,
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)
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from mempalace.backends.chroma import (
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ChromaBackend,
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ChromaCollection,
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_fix_blob_seq_ids,
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_pin_hnsw_threads,
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quarantine_stale_hnsw,
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)
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class _FakeCollection:
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"""Stand-in for a chromadb.Collection returning raw chroma-shaped dicts."""
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def __init__(self, query_response=None, get_response=None, count_value=7):
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self.calls = []
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self._query_response = query_response or {
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"ids": [["a", "b"]],
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"documents": [["da", "db"]],
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"metadatas": [[{"wing": "w1"}, {"wing": "w2"}]],
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"distances": [[0.1, 0.2]],
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}
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self._get_response = get_response or {
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"ids": ["a"],
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"documents": ["da"],
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"metadatas": [{"wing": "w1"}],
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}
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self._count_value = count_value
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def add(self, **kwargs):
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self.calls.append(("add", kwargs))
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def upsert(self, **kwargs):
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self.calls.append(("upsert", kwargs))
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def update(self, **kwargs):
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self.calls.append(("update", kwargs))
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def query(self, **kwargs):
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self.calls.append(("query", kwargs))
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return self._query_response
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def get(self, **kwargs):
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self.calls.append(("get", kwargs))
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return self._get_response
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def delete(self, **kwargs):
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self.calls.append(("delete", kwargs))
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def count(self):
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self.calls.append(("count", {}))
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return self._count_value
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def test_chroma_collection_returns_typed_query_result():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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result = collection.query(query_texts=["q"])
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assert isinstance(result, QueryResult)
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assert result.ids == [["a", "b"]]
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assert result.documents == [["da", "db"]]
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assert result.metadatas == [[{"wing": "w1"}, {"wing": "w2"}]]
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assert result.distances == [[0.1, 0.2]]
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assert result.embeddings is None
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def test_chroma_collection_returns_typed_get_result():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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result = collection.get(where={"wing": "w1"})
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assert isinstance(result, GetResult)
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assert result.ids == ["a"]
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assert result.documents == ["da"]
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assert result.metadatas == [{"wing": "w1"}]
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def test_query_result_empty_preserves_outer_dimension():
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empty = QueryResult.empty(num_queries=2)
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assert empty.ids == [[], []]
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assert empty.documents == [[], []]
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assert empty.distances == [[], []]
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assert empty.embeddings is None
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def test_typed_results_support_dict_compat_access():
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"""Transitional compat shim per base.py — retained until callers migrate to attrs."""
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result = GetResult(ids=["a"], documents=["da"], metadatas=[{"w": 1}])
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assert result["ids"] == ["a"]
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assert result.get("documents") == ["da"]
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assert result.get("missing", "default") == "default"
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assert "ids" in result
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assert "missing" not in result
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def test_chroma_collection_query_empty_result_preserves_outer_shape():
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fake = _FakeCollection(
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query_response={"ids": [], "documents": [], "metadatas": [], "distances": []}
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)
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collection = ChromaCollection(fake)
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result = collection.query(query_texts=["q1", "q2"])
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assert result.ids == [[], []]
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assert result.documents == [[], []]
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assert result.distances == [[], []]
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def test_chroma_collection_rejects_unknown_where_operator():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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with pytest.raises(UnsupportedFilterError):
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collection.query(query_texts=["q"], where={"$regex": "foo"})
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def test_chroma_collection_delegates_writes():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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collection.add(documents=["d"], ids=["1"], metadatas=[{"wing": "w"}])
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collection.upsert(documents=["u"], ids=["2"], metadatas=[{"room": "r"}])
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collection.delete(ids=["1"])
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assert collection.count() == 7
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kinds = [call[0] for call in fake.calls]
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assert kinds == ["add", "upsert", "delete", "count"]
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def test_registry_exposes_chroma_by_default():
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names = available_backends()
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assert "chroma" in names
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assert isinstance(get_backend("chroma"), ChromaBackend)
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def test_registry_unknown_backend_raises():
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with pytest.raises(KeyError):
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get_backend("no-such-backend-exists")
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def test_resolve_backend_priority_order(tmp_path):
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from mempalace.backends import resolve_backend_for_palace
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# explicit kwarg wins over everything
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assert resolve_backend_for_palace(explicit="pg", config_value="lance") == "pg"
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# config value wins over env / default
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assert resolve_backend_for_palace(config_value="lance", env_value="qdrant") == "lance"
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# env wins over default
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assert resolve_backend_for_palace(env_value="qdrant", default="chroma") == "qdrant"
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# falls back to default
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assert resolve_backend_for_palace() == "chroma"
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def test_chroma_detect_matches_palace_with_chroma_sqlite(tmp_path):
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(tmp_path / "chroma.sqlite3").write_bytes(b"")
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assert ChromaBackend.detect(str(tmp_path)) is True
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assert ChromaBackend.detect(str(tmp_path.parent)) is False
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def test_query_rejects_missing_input():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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with pytest.raises(ValueError):
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collection.query()
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def test_query_rejects_both_texts_and_embeddings():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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with pytest.raises(ValueError):
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collection.query(query_texts=["q"], query_embeddings=[[0.1, 0.2]])
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def test_query_rejects_empty_input_list():
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fake = _FakeCollection()
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collection = ChromaCollection(fake)
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with pytest.raises(ValueError):
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collection.query(query_texts=[])
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def test_query_empty_preserves_embeddings_outer_shape_when_requested():
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fake = _FakeCollection(
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query_response={"ids": [], "documents": [], "metadatas": [], "distances": []}
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)
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collection = ChromaCollection(fake)
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requested = collection.query(query_texts=["q1", "q2"], include=["documents", "embeddings"])
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assert requested.embeddings == [[], []]
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not_requested = collection.query(query_texts=["q1", "q2"], include=["documents"])
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assert not_requested.embeddings is None
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def test_chroma_cache_invalidates_when_db_file_missing(tmp_path):
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"""A palace rebuild that removes chroma.sqlite3 must drop the stale cache.
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Primes backend._clients/_freshness directly with a sentinel rather than
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opening a real ``PersistentClient``: on Windows the sqlite file handle
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would still be live and ``Path.unlink`` would raise ``PermissionError``,
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making the test unable to exercise the branch we care about. The decision
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logic under test is pure (no chromadb calls before the branch), so a
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sentinel is sufficient.
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"""
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backend = ChromaBackend()
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palace_path = tmp_path / "palace"
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palace_path.mkdir()
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db_file = palace_path / "chroma.sqlite3"
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db_file.write_bytes(b"") # any file is enough for _db_stat to see it
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st = db_file.stat()
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sentinel = object()
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backend._clients[str(palace_path)] = sentinel
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backend._freshness[str(palace_path)] = (st.st_ino, st.st_mtime)
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# Simulate a rebuild mid-flight: chroma.sqlite3 goes away. Safe to unlink
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# because nothing in this test is holding an OS handle on the file.
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db_file.unlink()
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prior_freshness = (st.st_ino, st.st_mtime)
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new_client = backend._client(str(palace_path))
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# Cache was replaced (not the sentinel) and freshness reflects the post-
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# rebuild stat (chromadb re-creates chroma.sqlite3 during PersistentClient
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# construction; _client re-stats after the constructor so freshness is
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# not frozen at the pre-rebuild value). The stale cached sentinel would
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# have served wrong data if returned.
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assert new_client is not sentinel
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assert backend._freshness[str(palace_path)] != prior_freshness
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def test_chroma_cache_picks_up_db_created_after_first_open(tmp_path):
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"""The 0 → nonzero stat transition invalidates a cache built before the DB existed."""
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backend = ChromaBackend()
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palace_path = tmp_path / "palace"
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palace_path.mkdir()
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# Seed an entry in the caches as if a prior _client() call had opened the
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# palace when chroma.sqlite3 did not exist yet. Freshness (0, 0.0) is the
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# signal that the DB was absent at cache time.
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sentinel = object()
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backend._clients[str(palace_path)] = sentinel
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backend._freshness[str(palace_path)] = (0, 0.0)
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# The DB file now appears (real chromadb would have created it by now).
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# Use a real chromadb call so _fix_blob_seq_ids and PersistentClient succeed.
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import chromadb as _chromadb
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_chromadb.PersistentClient(path=str(palace_path)).get_or_create_collection("seed")
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assert (palace_path / "chroma.sqlite3").is_file()
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# Next _client() call must detect the 0 → nonzero transition and rebuild.
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refreshed = backend._client(str(palace_path))
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assert refreshed is not sentinel
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assert backend._freshness[str(palace_path)] != (0, 0.0)
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def test_base_collection_update_default_rejects_mismatched_lengths():
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"""The ABC default update() raises ValueError rather than silently misaligning."""
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from mempalace.backends.base import BaseCollection
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collection = ChromaCollection(_FakeCollection())
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with pytest.raises(ValueError, match="documents length"):
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BaseCollection.update(collection, ids=["1", "2"], documents=["only-one"])
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with pytest.raises(ValueError, match="metadatas length"):
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BaseCollection.update(collection, ids=["1", "2"], metadatas=[{"k": 9}])
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def test_chroma_backend_accepts_palace_ref_kwarg(tmp_path):
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palace_path = tmp_path / "palace"
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backend = ChromaBackend()
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collection = backend.get_collection(
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palace=PalaceRef(id=str(palace_path), local_path=str(palace_path)),
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collection_name="mempalace_drawers",
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create=True,
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)
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assert palace_path.is_dir()
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assert isinstance(collection, ChromaCollection)
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def test_chroma_backend_create_false_raises_without_creating_directory(tmp_path):
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palace_path = tmp_path / "missing-palace"
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with pytest.raises(FileNotFoundError):
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ChromaBackend().get_collection(
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str(palace_path),
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collection_name="mempalace_drawers",
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create=False,
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)
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assert not palace_path.exists()
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def test_chroma_backend_create_true_creates_directory_and_collection(tmp_path):
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palace_path = tmp_path / "palace"
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collection = ChromaBackend().get_collection(
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str(palace_path),
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collection_name="mempalace_drawers",
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create=True,
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)
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assert palace_path.is_dir()
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assert isinstance(collection, ChromaCollection)
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client = chromadb.PersistentClient(path=str(palace_path))
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client.get_collection("mempalace_drawers")
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def test_chroma_backend_creates_collection_with_cosine_distance(tmp_path):
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palace_path = tmp_path / "palace"
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ChromaBackend().get_collection(
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str(palace_path),
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collection_name="mempalace_drawers",
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create=True,
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)
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client = chromadb.PersistentClient(path=str(palace_path))
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col = client.get_collection("mempalace_drawers")
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assert col.metadata.get("hnsw:space") == "cosine"
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def test_fix_blob_seq_ids_converts_blobs_to_integers(tmp_path):
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"""Simulate a ChromaDB 0.6.x database with BLOB seq_ids and verify repair."""
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db_path = tmp_path / "chroma.sqlite3"
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conn = sqlite3.connect(str(db_path))
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conn.execute("CREATE TABLE embeddings (rowid INTEGER PRIMARY KEY, seq_id)")
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conn.execute("CREATE TABLE max_seq_id (rowid INTEGER PRIMARY KEY, seq_id)")
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# Insert BLOB seq_ids like ChromaDB 0.6.x would
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blob_42 = (42).to_bytes(8, byteorder="big")
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blob_99 = (99).to_bytes(8, byteorder="big")
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conn.execute("INSERT INTO embeddings (seq_id) VALUES (?)", (blob_42,))
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conn.execute("INSERT INTO max_seq_id (seq_id) VALUES (?)", (blob_99,))
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conn.commit()
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conn.close()
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_fix_blob_seq_ids(str(tmp_path))
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conn = sqlite3.connect(str(db_path))
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row = conn.execute("SELECT seq_id, typeof(seq_id) FROM embeddings").fetchone()
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assert row == (42, "integer")
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row = conn.execute("SELECT seq_id, typeof(seq_id) FROM max_seq_id").fetchone()
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assert row == (99, "integer")
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conn.close()
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def test_fix_blob_seq_ids_noop_without_blobs(tmp_path):
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"""No error when seq_ids are already integers."""
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db_path = tmp_path / "chroma.sqlite3"
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conn = sqlite3.connect(str(db_path))
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conn.execute("CREATE TABLE embeddings (rowid INTEGER PRIMARY KEY, seq_id INTEGER)")
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conn.execute("INSERT INTO embeddings (seq_id) VALUES (42)")
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conn.commit()
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conn.close()
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_fix_blob_seq_ids(str(tmp_path))
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conn = sqlite3.connect(str(db_path))
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row = conn.execute("SELECT seq_id, typeof(seq_id) FROM embeddings").fetchone()
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assert row == (42, "integer")
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conn.close()
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def test_fix_blob_seq_ids_noop_without_database(tmp_path):
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"""No error when palace has no chroma.sqlite3."""
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_fix_blob_seq_ids(str(tmp_path)) # should not raise
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def test_fix_blob_seq_ids_writes_marker_after_blob_path(tmp_path):
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"""The .blob_seq_ids_migrated marker is written after a successful BLOB → INTEGER conversion."""
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from mempalace.backends.chroma import _BLOB_FIX_MARKER
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db_path = tmp_path / "chroma.sqlite3"
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conn = sqlite3.connect(str(db_path))
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conn.execute("CREATE TABLE embeddings (rowid INTEGER PRIMARY KEY, seq_id)")
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conn.execute("INSERT INTO embeddings (seq_id) VALUES (?)", ((42).to_bytes(8, "big"),))
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conn.commit()
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conn.close()
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marker = tmp_path / _BLOB_FIX_MARKER
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assert not marker.exists()
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_fix_blob_seq_ids(str(tmp_path))
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assert marker.is_file(), "marker must be written after a successful migration"
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def test_fix_blob_seq_ids_writes_marker_when_already_integer(tmp_path):
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"""The marker is written even when the migration is a no-op (already INTEGER).
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The point of the marker is to skip the sqlite3 open on subsequent calls,
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not to record that a conversion happened. So a clean palace gets the
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marker on first run too — next ``_fix_blob_seq_ids`` call short-circuits
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before touching the sqlite3 file.
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"""
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from mempalace.backends.chroma import _BLOB_FIX_MARKER
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db_path = tmp_path / "chroma.sqlite3"
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conn = sqlite3.connect(str(db_path))
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conn.execute("CREATE TABLE embeddings (rowid INTEGER PRIMARY KEY, seq_id INTEGER)")
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conn.execute("INSERT INTO embeddings (seq_id) VALUES (42)")
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conn.commit()
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conn.close()
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marker = tmp_path / _BLOB_FIX_MARKER
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assert not marker.exists()
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_fix_blob_seq_ids(str(tmp_path))
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assert marker.is_file(), "marker must be written even when no BLOBs found"
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def test_fix_blob_seq_ids_skips_sqlite_when_marker_present(tmp_path):
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"""When the marker exists, ``_fix_blob_seq_ids`` does not open sqlite3.
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This is the load-bearing property of the marker — opening Python's
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sqlite3 against a live ChromaDB 1.5.x WAL DB corrupts the next
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PersistentClient call (#1090). Once a palace has been migrated, we
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never want to open it again, even read-only.
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"""
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from unittest.mock import patch
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from mempalace.backends.chroma import _BLOB_FIX_MARKER
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# Pre-create the marker so the function should short-circuit.
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db_path = tmp_path / "chroma.sqlite3"
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db_path.write_bytes(b"sentinel") # presence required for the function to proceed
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(tmp_path / _BLOB_FIX_MARKER).touch()
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with patch("mempalace.backends.chroma.sqlite3.connect") as mock_connect:
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_fix_blob_seq_ids(str(tmp_path))
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mock_connect.assert_not_called()
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# ── quarantine_stale_hnsw ─────────────────────────────────────────────────
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def _make_palace_with_segment(tmp_path, hnsw_mtime, sqlite_mtime):
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"""Helper: build a palace dir with one HNSW segment + sqlite at given mtimes."""
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palace = tmp_path / "palace"
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palace.mkdir()
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(palace / "chroma.sqlite3").write_text("")
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seg = palace / "abcd-1234-5678"
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seg.mkdir()
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(seg / "data_level0.bin").write_text("")
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os.utime(seg / "data_level0.bin", (hnsw_mtime, hnsw_mtime))
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os.utime(palace / "chroma.sqlite3", (sqlite_mtime, sqlite_mtime))
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return palace, seg
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def test_quarantine_stale_hnsw_renames_drifted_segment(tmp_path):
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"""Segment whose data_level0.bin is 2h older than sqlite gets renamed."""
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now = 1_700_000_000.0
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palace, seg = _make_palace_with_segment(tmp_path, hnsw_mtime=now - 7200, sqlite_mtime=now)
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moved = quarantine_stale_hnsw(str(palace), stale_seconds=3600.0)
|
|
assert len(moved) == 1
|
|
assert ".drift-" in moved[0]
|
|
assert not seg.exists()
|
|
# the renamed directory still exists and contains the original file
|
|
renamed = list(palace.iterdir())
|
|
drift_dirs = [p for p in renamed if ".drift-" in p.name]
|
|
assert len(drift_dirs) == 1
|
|
assert (drift_dirs[0] / "data_level0.bin").exists()
|
|
|
|
|
|
def test_quarantine_stale_hnsw_leaves_fresh_segment_alone(tmp_path):
|
|
"""Segment with recent mtime vs sqlite is not touched."""
|
|
now = 1_700_000_000.0
|
|
palace, seg = _make_palace_with_segment(tmp_path, hnsw_mtime=now - 10, sqlite_mtime=now)
|
|
moved = quarantine_stale_hnsw(str(palace), stale_seconds=3600.0)
|
|
assert moved == []
|
|
assert seg.exists()
|
|
|
|
|
|
def test_quarantine_stale_hnsw_no_palace(tmp_path):
|
|
"""Missing palace path or chroma.sqlite3: return [] without raising."""
|
|
assert quarantine_stale_hnsw(str(tmp_path / "missing")) == []
|
|
empty = tmp_path / "empty"
|
|
empty.mkdir()
|
|
assert quarantine_stale_hnsw(str(empty)) == []
|
|
|
|
|
|
def test_quarantine_stale_hnsw_skips_already_quarantined(tmp_path):
|
|
"""Directories already named with ``.drift-`` suffix are never re-renamed."""
|
|
now = 1_700_000_000.0
|
|
palace = tmp_path / "palace"
|
|
palace.mkdir()
|
|
(palace / "chroma.sqlite3").write_text("")
|
|
os.utime(palace / "chroma.sqlite3", (now, now))
|
|
drift = palace / "abcd-1234.drift-20260101-000000"
|
|
drift.mkdir()
|
|
(drift / "data_level0.bin").write_text("")
|
|
os.utime(drift / "data_level0.bin", (now - 99999, now - 99999))
|
|
|
|
moved = quarantine_stale_hnsw(str(palace), stale_seconds=3600.0)
|
|
assert moved == []
|
|
assert drift.exists()
|
|
|
|
|
|
# ── _pin_hnsw_threads ─────────────────────────────────────────────────────
|
|
|
|
|
|
def test_pin_hnsw_threads_retrofits_legacy_collection(tmp_path):
|
|
"""Legacy collections (created without num_threads) get the retrofit applied."""
|
|
palace_path = tmp_path / "legacy-palace"
|
|
palace_path.mkdir()
|
|
|
|
client = chromadb.PersistentClient(path=str(palace_path))
|
|
col = client.create_collection(
|
|
"mempalace_drawers",
|
|
metadata={"hnsw:space": "cosine"}, # no num_threads — legacy
|
|
)
|
|
assert col.configuration_json.get("hnsw", {}).get("num_threads") is None
|
|
|
|
_pin_hnsw_threads(col)
|
|
|
|
assert col.configuration_json["hnsw"]["num_threads"] == 1
|
|
|
|
|
|
def test_pin_hnsw_threads_swallows_all_errors():
|
|
"""Retrofit never raises even when collection.modify explodes."""
|
|
|
|
class _ExplodingCollection:
|
|
def modify(self, *args, **kwargs):
|
|
raise RuntimeError("boom")
|
|
|
|
_pin_hnsw_threads(_ExplodingCollection()) # must not raise
|
|
|
|
|
|
def test_get_collection_applies_retrofit_on_existing_palace(tmp_path):
|
|
"""ChromaBackend.get_collection(create=False) applies the retrofit."""
|
|
palace_path = tmp_path / "palace"
|
|
palace_path.mkdir()
|
|
|
|
# Simulate a legacy palace: create collection without num_threads
|
|
bootstrap_client = chromadb.PersistentClient(path=str(palace_path))
|
|
bootstrap_client.create_collection("mempalace_drawers", metadata={"hnsw:space": "cosine"})
|
|
del bootstrap_client # drop reference so a fresh client reopens cleanly
|
|
|
|
wrapper = ChromaBackend().get_collection(
|
|
str(palace_path),
|
|
collection_name="mempalace_drawers",
|
|
create=False,
|
|
)
|
|
|
|
assert wrapper._collection.configuration_json["hnsw"]["num_threads"] == 1
|